Though this is mostly used by the compiler, it may be impacting your code image generation. Also, on same page, what about ""Override device description file"? You can try turning this on and clicking on the the button to view the installed files - there should be one in an NXP folder called "iolpc2368.ddf". Under Project->Options->Debugger->Setup do you have "Use macro file(s)" checked (and if so, what is macro file name)? I've found on the LPC2103 that I often needed to run one to ensure processor was fully reset during multiple download/debug sessions. IT is possible that the flash is write protected, many times ones needs to run a macro file as part of the JTAG initialization with these parts or one of the other more obscure settings.
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